Publications

Peer-reviewed articles acknowledging support by the AGRON-OMICS grant

• Stitt, M, Usadel, B. and Lunn, J. (2010) Primary photosynthetic metabolism - more than the icing on the cake- Plant J. Arabidopsis special issue. in press

2009

• Naouar N, Vandepole K, Lammens T, Casneuf T, Zeller G, van Hummelen P, Weigel D, Ratsch G, Inze' D, Kuiper M, De Veylder L, Vuylsteke M (2009). Qauntitative RNA expression analysis with Affymetrix Tiling 1.0R arrays identifies new E2F target genes. Plant J. Jan;57(1):184-94. PMID: 18764924

• Pignocchi C, Minns GE, Nesi N, Koumproglou R, Kitsios G, Benning C, Lloyd CW, Doonan JH, Hills MJ. (2009). ENDOSPERM DEFECTIVE1 Is a Novel Microtubule-Associated Protein Essential for Seed Development in Arabidopsis. Plant Cell. Jan;21(1):90-105. PMID:19151224

• Hannemann J, Poorter H, Usadel B, Bläsing OE, Finck A, Tardieu F, Atkin OK, Pons T, Stitt M, Gibon Y. (2009). Xeml Lab: a tool that supports the design of experiments at a graphical interface and generates computer-readable meta-data files, which capture information about genotypes, growth conditions, environmental perturbations and sampling strateg. Plant Cell Environ. Sep;32(9):1185-200. PMID:19236607

• Micol, J.L. (2009). Leaf development: Time to turn over a new leaf? Current Opinion in Plant Biology Feb;12(1):9-16. PMID:19109050

• Sureshkumar, S., Todesco, M., Schneeberger, K., Harilal, R., Balasubramanian, S., and Weigel, D. (2009). A genetic defect caused by a triplet repeat expansion in Arabidopsis thaliana. Science. Feb 20;323 (5917):1060-3. PMID: 19150812

• Granier C, Tardieu F. (2009). Multi-scale phenotyping of leaf expansion in response to environmental changes: the whole is more than the sum of parts.Plant Cell Environ. Sep;32(9):1175-84. PMID: 19210637

• Reiland S, Messerli G, Baerenfaller K, Gerrits B, Endler A, Grossmann J, Gruissem W, Baginsky S. (2009). Large-scale Arabidopsis phosphoproteome profiling reveals novel chloroplast kinase substrates and phosphorylation networks. Plant Physiol. Jun;150(2):889-903. PMID: 19376835

• Gonzalez N, Beemster GT, Inzé D. (2009). David and Goliath: what can the tiny weed Arabidopsis teach us to improve biomass production in crops? Curr Opin Plant Biol. Apr;12(2):157-64. PMID: 19119056

• Crowell, E.F, Bischoff, V, Desprez, T, Rolland, A, Stierhof, Y-D, Schumacher, K, Gonneau, M, Höfte, H, and Vernhettes, S. (2009). Pausing of Golgi bodies on Microtubules Regulates Secretion of Cellulose Synthase Complexes in Arabidopsis. Plant Cell. Apr;21(4):1141-54. PMID: 19376932

• Sulpice R, Pyl ET, Ishihara H, Trenkamp S, Steinfath M, Witucka-Wall H, Gibon Y, Usadel B, Poree F, Conceição Piques M, Von Korff M, Steinhauser MC, Keurentjes JJB, Guenther M, Hoehne M, Selbig J, Fernie AR, Altmann T, and Stitt M. (2009). Starch as a major integrator in the regulation of plant growth. PNAS. Jun 23;106(25):10348-53. PMID:19506259

• Bush, M., Hutchins, A., Jones, A., Naldrett, M., Jarmolowski, A., Lloyd, C., and Doonan, J. (2009). Selective recruitment of proteins  to 5' CAP complexes during the growth cycle in Arabidopsis. Plant J Aug;59(3):400-12. PMID: 19453450

• Piques M, Schulze W, Hoehne M, Usadel B, Gibon Y, Rohwer J, and Stitt M. (2009) Ribosome and Transcript Copy Numbers, Polysome Occupancy and Enzyme Dynamics in Arabidopsis. Molecular Systems Biology 2009;5:314. PMID:19888209

• Baginsky S and Gruissem W. (2009) The chloroplast kinase network: new insights from large-scale phosphoproteome profiling. Molecular Plant Nov;2(6):1141-53. PMID: 19995723

• Baginski S, Hennig L, Zimmermann P, and Gruissem W. (2009) Gene expression analysis, proteomics, and network discovery. Plant Physiology [Ahead of publication on December 11, 2009] PMID: 20018595

• Rehrauer H, Aquino C, Gruissem W, Henz S, Hilson P, Laubinger S, Naouar N, Patrignani A, Rombautsn S, Shu H, Van de Peer Y, Vuylsteke M, Weigel D, Zeller G, Hennig L. (2009) AGRONOMICS1 - A new resource for Arabidopsis transcriptome profiling. Plant Physiology. Dec 23. [Epub ahead of print] PMID: 20032078

• Peaucelle A, Louvet R, Johansen JN, Höfte H, Laufs P, Pelloux J, Mouille G.Arabidopsis phyllotaxis is controlled by the methyl-esterification status of cell-wall pectins. Curr Biol. 2008 Dec 23;18(24):1943-8. PMID: 19097903

• Perez-Perez JM, Candela H, Robles P, Quesada V, Ponce MR, Micol JL. Lessons from a search for leaf mutants in Arabidopsis thaliana. Int J Dev Biol. Dec 23;18(24):1943-8. PMID: 19247929

2007

• Karimi, M., Bleys, A., Vanderhaeghen, R. and Hilson, P. (2007) Building blocks for plant gene assembly. Plant Physiology 145:1183-1191  PMID: 17965171

• Kitsios, G  Alexiou, KG, Bush, M, Shaw P, and Doonan JH. (2007)  A Cyclin dependent protein kinase, CDKC2, co-localizes with and modulates the distribution of spliceosomal components in Arabidopsis.  The Plant J PMID: 18208522

• Lisec, J., Meyer, R.C., Steinfath, M., Redestig, H., Becher, M., Witucka-Wall, H., Fiehn, O., Törjék, O, Selbig, J., Altmann, T., and Willmitzer, L. (2007) Identification of metabolic and biomass QTL in Arabidopsis thaliana in a parallel analysis of RIL and IL populations. The Plant J  PMID: 18047556

• Stitt M. Patent Application 07118640: System and method for producing weighed portions of powder from at least one biological material at cryotemperatures (Cryogenic Grinde). 2007

Other publications featuring AGRON-OMICS

• MASC Report 2008

• MASC Report 2009